Tag Archives: Trees

Forest Physiognomy

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I am old enough that I attended school at a time when educators still taught physiognomy to their students. I recall being attracted to the idea that you could predict someone’s character, criminal or violent inclinations, passions and general temperament by the location of bumps or indentations on the head, the shape of the nose, or the forward projection of the jaw. Dampening my enthusiasm, we were taught physiognomy as an example of pseudoscience, and that we should make sure to not embrace ideas simply because they were intuitively attractive. And this letdown came after I had spent several precious moments learning how to pronounce the word.

Two tranquil foreheads. Credit: Giambattista della Porta: De humana physiognomonia libri IIII. From website of the National Library of Medicine: http://www.nlm.nih.gov/exhibition/historicalanatomies/porta_home.html.

Later, I was delighted to learn in my plant communities class in graduate school that forests had physiognomy, and that reputable scientists actually studied it. Forest physiognomy is the general appearance of a forest, including the height, spacing and structural growth forms of its dominant species.  Michelle Spicer described to me that she went to Central America as an engineering undergraduate student, and became enraptured with tropical forests, including their physiognomy.

Tropical forest showing vast collection of lianas and a few epiphytes. Credit: Michelle Spicer.

Spicer switched from engineering to ecology, and as a graduate student realized that nobody had actually rigorously compared tropical and temperate forest physiognomy. Textbooks might talk about the importance of lianas (vines) and epiphytes (plants that grow on other plants and get nutrients from the air, water or debris lodged in their host plants) in tropical forests.  These same texts might also highlight the importance of the herbaceous layer in temperate forests. 

A temperate forest in the Smokey Mountains, USA. Credit: Michelle Spicer.

But there were few organized data to compare forest physiognomy in the two biomes. Spicer, an undergraduate student in her lab (Hannah Mellor), and her advisor (Walter Carson) chose to compare nine temperate forests and nine tropical forests, spreading across the Americas from Brazil to Canada. Each of these forests (studied by other researchers) had detailed downloadable plant species lists, which also included data about their height and reproductive status.  In total, the researchers went through over 100,000 records to create their dataset.

The figure below highlights the plant physiognomy concept. You can see that most of the species in temperate forests are herbs residing primarily in the forest floor layer.  In contrast, tropical forests have a much more even distribution of types of species, and location of growth.

The physiognomy of temperate and tropical forests. Credit: Jackie Spicer.

Quantitatively, 80% of temperate forest plant species are herbs, while only 7% are trees, and there are relatively few lianas and epiphytes.  In contrast, tropical forests boast a much more even distribution of each plant growth form.

Relative species richness of trees, shrubs, lianas, herbs and epiphytes in temperate and tropical forests.

Going along with the growth form distribution finding, most temperate plant species grow on the forest floor, while more tropical species are actually higher up (upshifted) in the understory – in part due to the prevalence of lianas and epiphytes in the understory layer.

Relative species richness of plants at different layers of temperate and tropical forests.

Spicer and her colleagues caution us that the up-shift in the tropical forest profile may be understated by the data, because even the best inventories are likely to miss epiphytes growing high in the canopy.

The tropical forest epiphyte Guzmania musaica. Credit: Michelle Spicer.

These findings have important implications for conservation and forest management.  Logging of tropical forests removes trees, but also removes lianas and epiphytes associated with trees. Lianas recover well from disturbance, but epiphytes take a long time to return following disturbance. Thus even relatively small-scale logging will significantly reduce biological diversity, not only in the plant communities, but in the many species of animals, fungi and microorganisms that interact with these plants. In contrast, temperate forests may be more resilient to logging, because the diverse herbaceous community can recover quickly, particularly if some canopy cover remains after logging.  Spicer and her colleagues argue that over-browsing by large ungulates, and changes in herbaceous species composition resulting from years of fire suppression are the two primary threats to the extensive biological diversity in the temperate forest herbaceous layer. With many species missing from the herbaceous plant community from these two sources, invasive species can take over, changing forest ecosystem functioning.  The researchers suggest that forest managers should prioritize managing the vast diversity of plant species that inhabit the temperate forest floor and understory.

note: the paper that describes this research is from the journal Ecology. The reference is Spicer, M. E., H. Mellor, and W. P. Carson. 2020. Seeing beyond the trees: a comparison of tropical and temperate plant growth-forms and their vertical distribution. Ecology 101(4):e02974. 10.1002/ecy. 2974.  Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2020 by the Ecological Society of America. All rights reserved.

Treefall gaps deliver diversity

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When John Terborgh began research at Cocha Cashu Biological Station in Peru back in 1974, he probably did not expect to still be working there 43 years later, doing research and publishing papers about the astounding species diversity in its tropical floodplain rainforest.

JT_TreefallLisa Davenport

John Terborgh leans against a fallen tree that has created a gap in the forest canopy. Credit: Lisa Davenport.

One contributor to species diversity in tropical forests is treefall gaps, which form when a mature tree falls down, opening up a gap in the overhead canopy. The most obvious change associated with treefall gaps is an increase in light that reaches the canopy floor. In comparison to the closed canopy, treefall gaps may be dryer, warmer, have increased plant transpiration rates, and may host many different species that colonize the new environment.

Treefallgap Irina Skinner

Small treefall gap in a dense rainforest. Credit: Irina Skinner

While it’s clear that gaps influence the physical environment of the forest floor, it is not clear how a changed physical environment translates to biological diversity of the treefall gap community. Comparing treefall gaps to closed canopy communities, Terborgh and his colleagues explored this relationship.

First the researchers asked whether the seed rain into tree gap communities is different from the seed rain into closed canopy communities. Seed rain describes the types and abundance of seeds that are dispersed into communities. Usually seeds are blown into communities by the wind, or enter attached to the bodies or excrement of animals. Alternatively, some seeds are autochorous – self-dispersing, in some cases aided by a change in fruit shape that causes seeds to be ejected explosively.

To do this analysis Terborgh and his colleagues needed a systematic way to measure seed rain. The researchers set up a regularly-spaced grid of small containers (seed traps) that collected a portion of the seeds that entered the community. They also needed a way to describe whether the canopy was closed, somewhat open, or very open as in a treefall gap. For each seed trap they calculated a canopy cover index (CCI), which measured the amount of vegetation found at different levels directly above the traps. A value of 0 indicated no vegetation (a completely open canopy), while a value of 6 indicated dense vegetation at all levels (a completely closed canopy).

As the graphs below indicate, there were some dramatic differences between gaps and canopies. Note that the x-axis has been log-transformed so CCI = 1 transforms to a log(CCI) = 0, and a CCI = 6 transforms to log(CCI) = 0.778. All four major groups of animal seed dispersers dispersed many more seeds into closed canopy forest than into treefall gaps. The relationship between seed abundance and canopy cover was strikingly linear for primates and small arboreal animals. This makes sense, as these animals tend to sit on trees, and spread seeds either through defecation of already eaten fruit, or by eating fruits and inadvertently spilling some seeds in the process. So very few trees in treefall gaps translates to many fewer seeds in treefall gaps, with most (76%) being blown in by the wind.

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The log abundance of potentially viable seeds (PV seeds on y-axes) collected in seed traps in relation to the log (canopy cover index) for six different types of seed dispersal agents/mechanisms.

Terborgh and his colleagues realized that differences in seed dispersal could profoundly influence the number and types of plants that were recruited into the population. Despite the scarcity of animals in tree fall gaps, most of the saplings (79%) that recruited into gaps were animal dispersed, whereas wind-dispersed species made up only 1% of the saplings.

Sapling species diversity was greater under a closed canopy.

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Sapling species diversity (measured as log(Fisher’s alpha)) in relation to canopy cover (measured as log (canopy cover index)).

Though species diversity was lower in tree fall gaps in comparison to the closed canopy, species composition (the types of species found there) was very different in treefall gaps. There were many species that recruited only under gaps, and were never found under a closed canopy. Interestingly, there is good evidence that the small treefall gaps in this study recruited a different set of tree species than do larger treefall gaps, which tend to recruit species that do best under conditions of very bright sunlight. Thus the researchers conclude that treefall gaps, small and large, offer a wide range of environmental conditions not found in the closed canopy,  that ultimately help to promote astoundingly high tropical forest tree diversity.

note: the paper that describes this research is from the journal Ecology. The reference is Terborgh, J., Huanca Nuñez, N., Alvarez Loayza, P. and Cornejo Valverde, F. (2017), Gaps contribute tree diversity to a tropical floodplain forest. Ecology, 98: 2895–2903. doi:10.1002/ecy.1991. Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2017 by the Ecological Society of America. All rights reserved.

Powdery parasites pursue pedunculate oak

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Studying disease transmission is tricky for many reasons. Most humans frown on what might seem like the easiest experimental protocol – release a disease into the environment and watch to see how it spreads. For his doctoral dissertation in 2006, Ayco Tack settled on a different experimental protocol – bring the potential hosts to the disease. In this study, staged in Finland, the hosts were pedunculate oak trees, Quercus robur, and the disease was the powdery mildew parasite, Erysiphe alphitoides. Almost 10 years later, Adam Ekholm continued research on the same system, with Tack as his co-supervisor.

Ayco Tack

Trees on the move. Credit: Ayco Tack.

But before moving trees around, the researchers first needed to see how the disease moved around under field conditions.  Within a tree stand, powdery mildew success will depend on how many trees it occupies, how many trees it colonizes in the future, and how many trees it disappears from (extinction rate). The researchers measured these rates over a four year period (2003 – 2006) on 1868 oak trees situated on the island of Wattkast in southwest Finland. They also measured spatial connectivity of each tree to others in the stand. In this case connectivity is a measure of the distance between a tree and other trees, weighted by the size of the other trees. So a tree that has many large neighbors nearby has high connectivity, while a tree with a few distant and mostly small neighbors has low connectivity. Results varied from year-to-year, but in general, the researchers found higher infection rates, lower extinction rates, and some evidence of higher colonization rates in trees with high connectivity.

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Oak leaf infected with powdery mildew parasite. Credit: Adam Ekholm.

The importance of connectivity indicated that the parasites simply could not disperse efficiently to distant trees. But perhaps the environment might play a role in colonization rates as well. For example, fungi like powdery mildew tend to thrive in shady and humid environments. Thus a tree out in the open might resist colonization by powdery mildew more effectively than would a tree deep in the forest. To test this hypothesis, Tack and his colleagues placed 70 trees varying distances (up to 300 meters) from an infected oak stand. On one side of the oak stand was an open field, while the other side was closed forest. Thus two variables, distance and environment, could be investigated simultaneously.

Ayco Tack inspecting a potted tree_Tomas Roslin

Ayco Tack inspects an oak tree placed in an open field. Credit: Tomas Roslin.

The researchers collected infection data twice; once in the middle of the growing season (July) and a second time at the end of the growing season (September). Not surprisingly, infection rates were higher by the end of the growing season. In general, infection rates, and infection intensity (mildew abundance) were higher in the forest than in the field, indicating a strong environment effect. In the July survey, trees further from the oak stand had lower infection intensity, but as infection rates increased over the course of the season, the effects of distance diminished, particularly in the forest.

EkholmFig3

Upper two graphs show the impact of habitat type on (a) proportion of trees infected and (b) mildew abundance. The lower two graphs are the influence of distance from parasite source on mildew abundance of trees set in (c) a forest habitat and (d) an open field. Mildew abundance was scored on an ordinal scale with 0 = none and 4 = very abundant.

Ten years later, Adam Ekholm, as part of his PhD dissertation that studies the effect of climate on the insect community on oak trees, added a third element to the mix – the influence of genes on disease resistance. He wondered whether certain genotypes were more resistant to powdery mildew infection. The researchers grafted twigs from 12 large “mother” trees, creating 12 groups of trees, with between 2 – 27 trees per group (depending on grafting success). Each tree in a given group was thus genetically identical to all other trees within that group.

Ayco Tack

Oak tree placed in the forest. Credit: Ayco Tack.

The researchers chose a site that contained a dense stand of infected oaks, but was surrounded by a grassy matrix that contained only an occasional tree. To study the impact of early season exposure, Ekholm and his colleagues divided the trees into two groups; 128 trees were placed in the matrix at varying distances from the infected stand, while 58 trees were placed directly in the midst of the stand for about 50 days, and then moved varying distances away. The researchers scored trees for infection at the end of the growing season (mid-September).

 

Trees that spent 50 days within the oak stand had much higher infection frequency and intensity than trees that were initially placed in the matrix. Some genotypes (for example genotype I in graphs C and D below) were much more resistant to infection than others (such as genotypes D and J). Finally trees further from the source of infection were less susceptible to become colonized over the course of the summer (data not shown).

EkholmFig2

Proportion of trees infected (A) and proportion of leaves infected (B) in response to early season exposure to stand of oaks infected with the powdery mildew parasite (oak stand) or no early season exposure (matrix). Proportion of trees infected (C) and proportion of leaves infected (D) in relation to tree genotype. Genotypes are labeled A – L; numbers in parenthesis are sample size for each group.

These findings illustrate how dispersal, host genotype and the environment influence the spread of a parasite under natural conditions. The parasite exists as a metapopulation – a group of local populations inhabiting networks of somewhat discrete habitat patches. Some populations go extinct while others successfully colonize each year, depending on distance from a source, tree genotype and environment. Ekholm and his colleagues encourage researchers to use similar experimental approaches in other host-parasite systems to evaluate how general these findings are, and to explore how multiple factors interact to shape the dynamics of disease transmission.

note: the paper that describes this research is from the journal Ecology. The reference is Ekholm, Adam; Roslin, Tomas; Pulkkinen, Pertti and Tack, Ayco. J. M. (2017). Dispersal, host genotype and environment shape the spatial dynamics of a parasite in the wild. Ecology. doi:10.1002/ecy.1949. The paper should come out in print very soon. Meanwhile you can also link to Dr. Tack’s website at www.plantmicrobeinsect.com Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2017 by the Ecological Society of America. All rights reserved.

Highly disturbed birds

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About 50 million years ago, the fast-moving Indo-Australian plate crashed into the Eurasian plate, giving rise to the Indian peninsula, and beginning a process of faulting and folding that ultimately formed our present day Himalaya Mountains. This process continues today, with the Himalayas still rising about 5 mm per year. The region is very variable, with tremendous glaciers and snowfields at high elevations, and forests and grasslands at lower elevations.

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The lead Author, Paul Elsen, stands in front of the Tirthan Valley.  The highest peaks range up to 4900 meters.

The variation in elevation, climate and soils make the Himalyan region in northern India a mecca of biological diversity, hosting over 10,000 identified plant species and about 1000 bird species. As in most of India, human population growth is putting enormous pressure on the forested regions, partly as a source of wood for heating and cooking, which has led to extensive deforestation. In concert, substantial forested areas are being converted to farms or pastures to feed the growing population. Paul Elsen and his colleagues wanted to know how these transformations of forests to cropland and pastures were affecting bird population across the region. They were particularly interested in how birds survived the winter, a period of climatic stress and food scarcity, when many of the birds descend from their high elevation breeding grounds to lower elevations that are nearer to human populations.

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Chestnut-headed Tesia, an altitudinal migrant found in high elevation forests in summer, and in forests and agricultural lands in winter. Credit: Prashant Negi.

The researchers set up three transects across four different landscapes (total of 12 transects), representing four levels of disturbance. The undisturbed landscape was primary forest in the Great Himalayan National Park. A second disturbance type – low intensity – retained a mixture of community forest used for timber and fuel, and also included some small agricultural plots. A third disturbance type – medium intensity – had small wooded areas, but was dominated by mixed agriculture including orchards and a variety of crops such as grains, beans and garlic. The final disturbance type – high intensity – was used as pasture, had mostly grasses and very few trees or crops.

ElsenDisturbances

Four land-use types. Credit Paul Elsen

The basic research protocol was literally a walk in the woods. Elsen walked (slowly) along the same trail in each transect three times during the winter season, and identified and counted all of the birds. Other researchers identified, measured and counted the plants growing along the transects.

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Lead field assistant, Lal Chand (left), and co-author Kalyanaraman Ramnarayan (right) conduct plant surveys near the top of the world.

 

Elsen was stunned by what his team discovered. Before beginning this study, he had spent about a year in the Himalayas within intact forests doing other PhD-related research. His travels into surrounding villages showed significant bird activity, but he assumed these birds were primarily species associated with humans or more open habitats. He expected decreasing bird diversity and abundance with increasing agricultural intensification, where the bird communities in intact primary forest would be teeming with species in high densities, and the areas with mixed agriculture and intensively grazed pastures would have just a few species. The data below paint a contrasting picture.

ElsenFig3

Mean and standard error of (a) bird abundance and (b) number of bird species per site across the four land-use types.

Primary forest hosted the fewest number of birds and the fewest species of birds. Among the three disturbance levels, low- and medium-intensity had greater abundance and diversity than did the high-intensity disturbed sites. At least in the winter, low- and medium-intensity disturbed landscapes can be beneficial to bird populations. Elsen suggests that birds are attracted to the tremendous amount of food available in the agricultural lands, such as fruiting trees and shrubs, even in winter. Some birds can consume these fruits, while other birds consume the yummy energy-rich insects that are attracted to the fruit. There are also plenty of seeds available for granivorous birds. But high-intensity disturbed landscapes lack these benefits, leading to fewer forest-adapted bird species, which are replaced by open-country or generalist bird species.

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Pastoralist and his goats in a high-intensity disturbed site. Credit: Prashant Nagi.

 

The researchers caution that we still don’t know have a clear picture of how birds use different landscapes during the breeding season, although preliminary data indicate that more species are unique to primary forests during breeding season than in winter, and that fewer species inhabit intensively grazed pastures during breeding season than in winter. Consequently, Elsen and his colleagues recommend a holistic conservation approach, which recognizes the importance of conserving large portions of intact primary forest, while at the same time preserving landscapes with low- and medium-intensity agriculture.

note: the paper that describes this research is from the journal Conservation Biology. The reference is Elsen, P. R., Kalyanaraman, R., Ramesh, K., & Wilcove, D. S. (2016). The importance of agricultural lands for Himalayan birds in winter. Conservation Biology 31 (2): 416-426. Thanks to the Society for Conservation Biology for allowing me to use figures from the paper. Copyright © 2017 by the Society for Conservation Biology. All rights reserved.

Cottonwood genes and spider hostels

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Back in my working days, people that I met would sometimes ask me what I did for my research. I usually told them that I studied spider sex, which, while true, was a bit misleading, as my interests were actually slightly broader. But studying spider sex was a good fit for my disposition, because, more than anybody I know, I can stare at something for a very long time and not get bored. And when spiders have sex, there can be very long periods, when, to our eyes, nothing is going on. As it turns out there is a great deal of pheromonal communication going on, and considerable vibrational activity as well, but it is not that easy for humans (even abnormally patient ones) to detect.

Taphrina

A spider and her three egg cases within a web she has built in a Taphrina blister. Credit Matt Barbour

The point is that I have a very soft spot in my heart for spiders, and was delighted to learn about an indirect process that provided a comfortable home for needy spiders. Heather Slinn got interested in her project while an undergraduate summer intern. Her colleague, Matt Barbour, pointed out that when he flipped over blistered black cottonwood leaves (Populus trichocarpa) he often found a spider hanging out in there. This observation led to her to study the relationship between cottonwood trees, cottonwood genetics, pathogens that make leaf blisters and spider occupancy rates.

Taphrina fungi form cup-like blisters in the leaves of Populous trees. But these trees vary in how susceptible they are to leaf blisters. The researchers wanted to answer three questions about this relationship. First, do spiders prefer to live in leaf-blisters as opposed to unblistered leaves? Second, are differences in tree susceptibility to Taphrina a result of genetic differences between the trees? And third can differences in Taphrina-resistance account for differences in spider density?

One of the keys to the experiment was establishing a garden with distinct clones of trees of known genetic makeup (genotypes). Slinn and her colleagues studied five different genotypes, with approximately 40 trees per genotype. They dutifully watered them throughout the summer, and then sampled up to 30 leaves from each tree for blister density, blister size, and spider residency, using a modified shop vac to suck up all of the spiders.

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Black Cottonwood garden. Credit Matt Barbour

The researchers discovered that blistered leaves were 35 times more likely to have a spider and/or spider web than were unblistered leaves. Clearly spiders found blistered leaves to be highly attractive homes.

But there were pronounced differences among the five genotypes in blister density, blister size, spider density and the probability that a spider was occupying a blister. Graph A shows that genotypes 1 and 3 (G1 and G3) had the lowest mean density of blisters (about 2 or 3 per meter of plant), while G4 averaged about 20 blisters per meter. Although G3 had relatively few blisters, it did boast the largest blisters (see graph B). The researchers concluded that blister density and size were both under genetic control, but not linked to each other.

SlinnGraph1D

Mean (A) blister density (number per meter of plant) and (B) blister size, for the five tree genotypes.

But how did blister density and size influence spider residency? G4, the genotype with the greatest number of blisters per plant, also had the greatest number of spiders (graph C). But on a per blister basis, we can see that the two genotypes with the largest blisters (G2 and G3 – see graph B) also had the highest probability of housing a spider in their blisters (graph D). So when spiders make decisions about where to live, both size and number are important.

SlinnGraph2D

Mean (C) spider density and (D) probability a blister hosts a spider, for the five tree genotypes.

It is unclear why the spiders are attracted to blisters.  Some spider species have been shown to be attracted to structural complexity, because that provides more or better attachment points for web strands and egg cases.  Depressed blisters may also give protection from abiotic factors such as wind and precipitation.

Like most good studies, this research raises a host of related questions. Why is there so much genetic variation in Taphrina-resistance within this tree species? Slinn suggests that there may be tradeoff whereby investment into Taphrina-resistance might compromise a plant’s ability to invest in other functions such as cold-resistance, or rapid growth and/or high reproductive rates. A second question is how does spider presence influence other species – for example does hosting a spider reduce the number of herbivorous insects that might attack the tree? A third issue raised by the authors is that plants infected with Taphrina may be weaker and more susceptible to herbivores. In that case, the spiders may be present in blisters because they are attracted to the herbivores that are eating the leaves. And finally, herbivores eating the leaves may transmit other diseases affecting our forests, such as dutch elm disease, chestnut blight and white pine blister rust. Unraveling this complex chain of events will keep researchers busy for many years.

note: the paper that describes this research is from the journal Ecology. The reference is Slinn, H. L., Barbour, M. A., Crawford, K. M., Rodriguez‐Cabal, M. A., & Crutsinger, G. M. (2016). Genetic variation in resistance to leaf fungus indirectly affects spider density. Ecology 98(3): 875-881. Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2017 by the Ecological Society of America. All rights reserved.