Fewer infections found in forest fragments

As human populations expand, we are converting ecosystems from one state to another.  In the case of tropical forests, conversion of forest to cropland may leave behind fragments of relatively undisturbed forest surrounded by a matrix of cropland or other forms of development.  Conservation ecologists are exploring whether ecological processes and ecosystem structure in these fragments work pretty much like normal forested regions, or whether fragments behave differently.  To do this, in a few locations around the world such as the Wog Wog Fragmentation Experiment in New South Wales, Australia, researchers have systematically created forest fragments of various sizes.  They can then ask a variety of questions comparing fragments vs. intact forest. For example,  how does species diversity, or how do processes such as competition, predation and mutualism differ in the two landscapes?

aerial photo2

Aerial photo of Wog Wog Fragmentation Experiment at the time the experiment began in 1987. Credit: Chris Margules.

Julian Resasco was working as a postdoctoral associate in Kendi Davies’ lab at the University of Colorado on a study that looked at changes in invertebrate communities in response to fragmentation at Wog Wog. Beginning in 1985, researchers had set up a network of pitfall traps, which are cups that are buried with their tops level to the ground, so that any careless organism that wanders in will be trapped in the cup.  Some pale-flecked garden skinks, Lampropholis guichenoti, also had the misfortune to become entrapped and became subjects for the study. The invertebrates, and the 186 unfortunate skinks were preserved in alcohol and stored as part of the Australian National Wildlife Collection.

Museumspec

Skink museum specimens at the Australian National Wildlife Collection. Credit: Julian Resasco.

Much later, Resasco arrived and began dissecting skink guts to analyze the prey items for a study that looked at how the skinks shifted prey consumption (their feeding niche) in response to fragmentation. While dissecting the skink guts, he noticed that some of the skinks had worms (nematodes) inside their guts.  These nematodes were relatively common among skinks from continuous eucalypt forests, rare among skinks from eucalypt fragments, and absent from skinks in the cleared, pine plantation matrix.

ResascoFig1

Top. The study area in southeast Australia, showing location of continuous forest, forest fragments and surrounding matrix.  Dots indicate locations of pitfall traps. The matrix was planted in pine seedlings soon after fragmentation.  Bottom. The pale-flecked garden sunskink Lampropholis guichenotti. Credit: Jules Farquar

As it turned out, the nematode was a new species, which Resasco and a colleague (Hugh Jones) named Hedruris wogwogensis. Nematodes in the genus Hedruris use crustaceans as intermediate hosts, which alerted Resasco and his colleagues that the terrestrial amphipod Arcitalitrus sylvaticus, which was very common in the pitfall traps, was probably an important intermediate host.  When amphipods from pitfall traps were examined microscopically, a small portion of them were infected with Hedruris wogwogensis. The researchers concluded that amphipods became infected when they ate plants that harbored nematode eggs or young nematodes, which then developed in amphipod guts, and were passed on to skinks that ate the amphipods.  Thus somewhat inadvertently, one aspect of the study transitioned into the question of how fragmentation can influence the transmission of parasites.

After concluding their skink dissections, Resasco and his colleagues discovered that skinks in continuous forest had five times the infection rate as did skinks in fragmented forest.  In addition, no skinks collected in the matrix were infected. Infected skinks harbored a similar number of nematodes, whether they lived in continuous forest or fragments (see the Table below). Lastly, amphipods were considerably more common in skink guts and pitfall traps from continuous forest, less so in fragments, and least in the matrix.

ResascoTab1good

Summary of data collected by Resasco and his colleagues. Nematode intensity is the mean number of nematodes per infected skink. Nematode abundance is the mean number of nematodes per skink (infected and uninfected). 

The researchers put these findings together in a structural equation model.  The boxes in the model below represent the variables, while the numbers in smaller boxes over the arrows are the regression coefficients, with larger positive numbers (in black) indicating stronger positive effects, and larger negative numbers (in red) indicating stronger negative effects.  The model revealed three important findings.  First, habitat fragmentation strongly reduced amphipod abundance.  High amphipod abundance was associated with high nematode abundance (that is the +0.20 in the model), so lower amphipod abundance from fragmentation reduced nematode abundance. Second, habitat fragmentation positively affected skink abundance – more skinks were captured in fragments than in intact forest, but this increase had no effect on nematode abundance in skinks.  Finally, note the direct arrows connecting “Fragmentation” to “Log nematode abundance in skinks”.  This indicates that other variables (beside amphipod abundance) are reducing infection rates in skinks that live in fragments and the matrix.

ResascoFig3

Structural equation model showing effects of fragmentation on nematode infection in skinks. Amphipods are the intermediate host.  Black arrows indicate significant positive effects of one variable on the other, while red arrows indicate significant negative effects. Solid lines represent fragments compared to controls and dashed lines represent the matrix compared to controls. Thicker lines are stronger effects.

At this point, we still have an incomplete understanding of the system.  We know that fragmentation reduces amphipods, which require a moist and shaded environment to thrive.  Reduced amphipod abundance leads to lower nematode infection rates in skinks.  But we know that other variables are important as well; perhaps nematodes survive more poorly in fragment and matrix soils. Interestingly, pine trees were planted in the matrix and are beginning to mature and shade out the matrix environment. Amphipod abundances are on the rise, so the researchers predict that nematode infection rates will begin to increase accordingly.  Those studies have begun.

IMG_2646

Eucalypt forest canopy at Wog Wog. Credit: Julian Resasco.

Looking at the bigger picture, it is clear that fragmentation may decrease (as in this study) or increase the abundance of an intermediate host. As an example of fragmentation increasing intermediate host abundance, the researchers describe a study in which fragmentation increased the abundance of the white footed mouse, an intermediate host for black-legged ticks (that host the bacteria that causes Lyme disease). We need to unravel the connections between landscape factors and the various species they influence, so we can begin to understand how human changes to the landscape can influence the transmission of diseases.

note: the paper that describes this research is from the journal Ecology. The reference is Resasco, J.,  Bitters, M. E.,  Cunningham, S. A.,  Jones, H. I.,  McKenzie, V. J., and  Davies, K. F..  2019. Experimental habitat fragmentation disrupts nematode infections in Australian skinks. Ecology  100( 1):e02547. 10.1002/ecy.2547. Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2019 by the Ecological Society of America. All rights reserved.

Invasive crayfish depress dragonflies and boost mosquitoes

Paradoxically, obliviousness and intense focus can be two sides of the same coin, as the following story highlights.  As a new graduate student at the University of Minnesota, I took a field ecology course at the University’s field station at Lake Itasca (famously known as headwaters of the Mississippi River).  One afternoon we watched dragonflies at a small pond; the male dragonflies were obviously patrolling territories and behaving thuggishly whenever intruders came by, and amorously whenever females of their species approached.  Surprisingly, territorial males chased off male intruders of any species, even though they posed no reproductive threat to them.  Why, I wondered…  So I sat there for many hours and kept very careful track of who chased whom, and for how long.  Big focus time. Ultimately, these observations blossomed into my doctoral dissertation.  Unfortunately, these observations also blossomed into the most virulent case of poison ivy known to humanity, as my intense focus on dragonflies obliviousized me to the luxurious patch of poison ivy, which served as my observation perch.

Anax junius Henry Hartley

Anax junius dragonflies in copula.  The male has the bright blue abdomen.  Credit: Henry Hartley.

Despite this ignoble incident, dragonflies remain one of my favorite animal groups.  They are strikingly beautiful, brilliant flyers, and fun to try to catch. In addition, they have so many wonderful adaptations, including males with penises that are shaped to scoop out sperm (previously introduced by another male) from their mate’s spermatheca, and females who go to extremes to avoid repeated copulation attempts, for example, by playing dead when approached by a male. Thus I was delighted to come across research by Gary Bucciarelli and his colleagues that highlighted the important role dragonflies play in stream ecosystems just west of Los Angeles, California.

Back Camera

Captured dragonfly nymph.  Dragonflies require from one to four years to develop in aquatic systems, before they metamorphose into terrestrial winged adults. As nymphs, they are fearsome predators on aquatic invertebrates. As adults, they specialize on winged insects, though there are stories of them killing small birds. Credit: Gary Bucciarelli

Bucciarelli and his colleagues came up with their research question as a result of working in local streams with students on a different project.  They wanted to know if invasive non-native crayfish (Procambarus clarkii) affect the composition of stream invertebrates and whether removal of crayfish could lead to rapid recovery of these invertebrate communities.

crayfish, egg masses, clutches

Invasive crayfish, P. clarkii, sits on the stream bottom. Credit: Gary Bucciarelli

The researchers collected stream invertebrate samples and noticed a dramatic pattern – in all the streams with crayfish there were numerous mosquito larvae, but in all of the streams without crayfish there were no mosquito larvae and much greater numbers of dragonfly nymphs. This led them to formulate and test two related hypotheses. First, dragonfly nymphs (Aeshnaspecies) are more efficient predators on mosquitoes (Anopheles species) than are the invasive crayfish. Second, crayfish interfere with dragonfly predation on mosquitoes in streams where crayfish and dragonflies are both present.

Field Sampling

Student researchers collect stream samples. Credit: Gary Bucciarelli

Bucciarelli and his colleagues systematically sampled 13 streams monthly from March to October 2016 in the Santa Monica Mountains. Eight streams have had crayfish populations since the 1960s, while four streams never had crayfish, and one stream had crayfish removed as part of a restoration effort in 2015. Overall, streams with crayfish had a much lower number of dragonfly nymphs than did streams without crayfish.  In addition, streams with crayfish had substantial populations of Anopheles mosquitoes, while streams without crayfish (but much higher dragonfly populations) had no Anopheles mosquitoes in the samples.

BuccTable1

Number of mosquito larvae (MSQ) and dragonfly nymphs (DF)  by month in streams with crayfish (CF – top row of data) or without crayfish (CF Absent – bottom row)

This field finding supports both of the hypotheses, but the evidence is purely correlational.  So the researchers brought the animals into the laboratory to test predation under more controlled conditions.  They introduced 15 mosquito larvae into tanks, and exposed them to one of four treatments: (1) a single crayfish, (2) a single dragonfly nymph, (3) one crayfish and one dragonfly nymph, or (4) no predators. The researchers counted the numbers of survivors periodically over the three day trials. As the graph below indicates, dragonflies are vastly superior consumers of mosquito larvae compared to crayfish.  However, when forced to share a tank with crayfish, dragonflies stop hunting, either huddling in corners or actually perching on the crayfish.  By 36 hours into the experiment, all of the dragonflies had been eaten by the crayfish.  After three days, mosquito survival was similar when comparing tanks with crayfish alone with tanks that had both a crayfish and a dragonfly.

BuccFig2A

Mean number of surviving mosquito larvae in tanks with a lone dragonfly (DF), a lone crayfish (CF), one crayfish and one dragonfly (CF+DF) in comparison to controls with no predators.

Bucciarelli and his colleagues conclude that dragonfly nymphs are much more efficient predators of mosquito larvae than are crayfish. But when placed together with crayfish, dragonfly foraging efficiency plummeted. Field surveys showed a negative correlation between crayfish abundance and dragonfly larvae, and much greater mosquito larva populations in streams with crayfish.  This supports the conclusion that invasive crayfish cause mosquito populations to increase sharply by depressing dragonfly populations and foraging efficiency.  This is a complex trophic cascade because crayfish increase mosquito populations despite eating a substantial number of mosquito individuals.

The researchers argue that crayfish probably relegate dragonfly larvae to inferior foraging habitats, thereby limiting their efficiency as mosquito predators. As such, ecosystem services provided by dragonflies to humans are greatly diminished.  Recently, several new mosquito species that are disease vectors have moved into California.  Thus the loss of dragonfly predation services could pose a public health threat to the human population.  Bucciarelli and his colleagues recommend removing the invasive crayfish to restore the natural community of predators, including dragonflies, which will then naturally regulate the increased number of potential disease vectors.

note: the paper that describes this research is from the journal Conservation Biology. The reference is Bucciarelli, G. M., Suh, D. , Lamb, A. D., Roberts, D. , Sharpton, D. , Shaffer, H. B., Fisher, R. N. and Kats, L. B. (2019), Assessing effects of non‐native crayfish on mosquito survival. Conservation Biology, 33: 122-131. doi:10.1111/cobi.13198. Thanks to the Society for Conservation Biology for allowing me to use figures from the paper. Copyright © 2019 by the Society for Conservation Biology. All rights reserved.

Rewilding tropical forests: dung is the key

Rewilding means different things to different people. Basically, it involves restoring a species, or several species to an area from which they have been extirpated by humans. Conservation biologists might study the population size and distribution of the returned species, ecologists might focus on interactions between the returned species and other species, while anthropologists might investigate how humans in the area are adjusting to having a new species in their lives.  One of the most famous examples of rewilding is the return of gray wolves to the Greater Yellowstone Ecosystem in western U.S.A., which can be looked at from the perspective of how the wolf populations are doing numerically, how they affect their prey (elk) or their prey’s prey (willow and aspen in the case of elk), and how they affect ranchers in the surrounding areas.

Conservation ecologists have begun a major rewilding program in Tijuca National Park in Brazil, introducing agoutis in 2010 and brown howler monkeys (Alouatta guariba clamitans) in 2015. Howler monkeys were extirpated from this park over a century ago, so ecologists worried that the monkeys might interact with the remaining species in unexpected ways.  For example, this forest hosts several species of invasive fruit trees, such as the jackfruit (Artocarpus heterophyllus). Luisa Genes and her colleagues were concerned that howler monkeys might eat fruits from these trees, and poop out the seeds in new forest locations, causing the invasive species to spread more rapidly.

GenesHowler1

Introduced howler monkey holding the second baby born to her in the forest. Credit: L. Genes.

Even a disturbed rainforest such as Tijuca National Park hosts a large number of plant species, so the interactions can be complex and difficult to study.  As is so often the case in ecology, one very important complex of interactions involves poop.  Specifically, howler monkeys eat fruit off of trees, and poop the seeds out, usually at a new location, effectively dispersing the seeds.  But there is a second link in this seed dispersal interaction.  Twenty-one species of dung beetles use howler monkey poop for food for themselves and their offspring, breaking off small sections into balls and rolling the balls to a new location.  This process of secondary dispersal is nice for the beetles, but also for the seeds within the balls, which can now germinate in a new location without competing with the large number of seeds in the original howler monkey pile.

RafaelBrixDungBeetles

Two dung beetles battle over a dung ball. Credit: Rafael Brix.

Genes and her colleagues were interested in two basic questions.  First, were the howler monkeys eating fruit from a few select tree species, or were they eating from many different types of trees, thereby dispersing seeds from many species?  Before releasing the monkeys (two females and two males), they attached radio transmitters to the monkeys so they could easily track them, and note what they ate.  Based on 337 hours of observation, the howler monkeys ate fruit from 60 different tree species out of 330 possible species in the forest (18.2%).  This is an underestimation of actual howler monkey contribution to seed dispersal, because the researchers observed the monkeys for a relatively brief time, and fruit consumption by the monkeys should increase over time as the population of monkeys (and possibly tree diversity), continues to increase.

bugio reintroduzido no PN Tijuca 2015

Male howler monkey released in 2016.  Note the radio transmitter on its right rear leg. Credit: L. Genes.

The second question is whether secondary dispersal by dung beetles was reestablished following reintroduction of howler monkeys.  To answer this question quantitatively, Genes and her colleagues set up an experiment that used plastic beads of various sizes instead of seeds. The researchers set up circular plots of 1m diameter with 70 grams of howler monkey poop in the middle.  Each pile was mixed with seeds (actually beads) of four different sizes (3, 6, 10 and 14 mm diameters) to mimic the range of seed sizes. The researchers measured secondary seed dispersal by returning 24 hours later and counting the remaining beads, reasoning that the rest had been moved by dung beetles (along with the poop) to a new location.

Genes and her colleagues discovered that the median rate of seed dispersal (bead removal) was 69% with larger seeds being moved at a significantly lower rate than smaller seeds.  Thus secondary seed dispersal by dung beetles was still operating in this ecosystem even after howler monkeys had been absent for over 100 years.

GenesdFig2

Removal rate of beads (seed mimics) from dung piles by dung beetles in relation to bead size.  Different letters above treatments indicate statistically significant differences between treatments. 

Overall, ecological interactions among howler monkeys, plants, and dung beetles were rapidly reestablished once howler monkeys were reintroduced to the community.  There are plans to introduce five more howler monkeys this year, which should further increase beneficial seed dispersal, and hopefully allow plant diversity to increase as well.  One problematic observation was that howler monkeys also ate invasive jackfruit, which could promote its dispersal within the community.

Luciano_Candisani_38-1

Luisa Genes monitors howler monkeys in the forest. Despite its apparent lushness, the forest still lacks many species and interactions that you would expect to find in an intact forest. Credit: L. Candisani.

The researchers discovered only 21 species of dung beetles, which was somewhat lower than other studies have found.  It is probable that conversion of this land into farmland in the 19thcentury led to the decline and/or demise of some dung beetle species.  With reintroduction of howler monkeys, and the passage of time, Genes and her colleagues expect that this rewilding effort should lead to a more robust ecosystem, with increased howler monkey populations supporting high dung beetle abundance and diversity, and more effective dispersal of many plant species. To understand the overall impact on forests, the researchers recommend that future studies should compare seedling survival and forest regeneration in areas where howler monkeys were reintroduced to areas where howler monkeys are still missing.

note: the paper that describes this research is from the journal Conservation Biology. The reference is Genes, L. , Fernandez, F. A., Vaz‐de‐Mello, F. Z., da Rosa, P. , Fernandez, E. and Pires, A. S. (2019), Effects of howler monkey reintroduction on ecological interactions and processes. Conservation Biology, 33: 88-98. doi:10.1111/cobi.13188. Thanks to the Society for Conservation Biology for allowing me to use figures from the paper. Copyright © 2019 by the Society for Conservation Biology. All rights reserved.

Quoll vs. toad: a toxic brew

A native of Central and South America, the cane toad, Rhinella marina, was introduced to Australia in 1935 with great fanfare. The plan was for the voracious cane toad to eat all of the grey-backed cane beetles that were plaguing sugar cane plantations in northern Australia (a similar introduction had been successful in Puerto Rico).  But the plan failed, in part because there was no cover from predators, so the toads were not enthusiastic about hanging out in sugar cane plantations, and in part because adult beetles live primarily near the tops of sugar cane, and cane toads are poor climbers.

UniToad_BenPhillips

A cane toad. Credit: Ben Philips

So now, northern Australia has a cane toad plague, which is wreaking havoc on ecosystems, and threatening many native species, including the northern quoll, Dasyurus hallucatus. These omnivorous marsupials eat fruit, invertebrates and small vertebrates.  Unfortunately, their long list of food items includes cane toads, which are highly toxic to most consumers, having poison glands that contain bufotoxin, a composite of several very nasty chemicals.  If a northern quoll eats a cane toad, it’s bye bye quoll.

Male captive born northern quoll_EllaKelly

A northern quoll. Credit: Ella Kelly.

Unfortunately most quolls have not gotten the message; huge numbers are dying, and populations are going extinct.  As toads continue their invasion from north to south, more quoll populations, particularly those in northwestern Australia, will be at risk.

KellyFig1

Map of Australia showing past (light shading) and recent (dark shading) northern quoll distribution, and present (solid line) and future (dashed line) cane toad distribution.

Some quolls show “toad-smart” behavior and don’t eat toads. Ella Kelly and Ben Phillips are trying to understand how this happens. This is particularly important because a few quoll populations have managed to survive the cane toad plague by virtue of being toad-smart (though 95% of quoll populations have gone extinct in the wake of the cane toad wave). The researchers reason that if there is a genetic basis to toad-smart behavior, it might be possible to introduce toad-smart individuals into populations that have not yet been overrun by cane toads.  These individuals with toad-smart genes would breed and spread their genes through their adopted population.  This strategy of targeted gene flow would give the recipient population the genetic variation needed, so that some individuals (those with toad-smart genes) would be more likely to survive the cane toad invasion.  Over time toad-smart behavior would spread throughout the population via natural selection.

Targeted gene flow requires the trait to be influenced by genes.  To test for a genetic basis to the toad-smart trait, Kelly and Phillips designed a common-garden experiment, capturing some quolls that had survived the cane toad invasion (toad-exposed), and others from regions that had not yet been exposed (toad-naïve).  At Territory Wildlife Park, Northern Territory, Australia, the researchers bred these quolls to create three lines of offspring: Toad-exposed x toad-exposed, toad-exposed x toad-naïve (hybrids), and toad-naïve x toad-naïve.  They raised these three lines under identical conditions at the park. Kelly and Phillips then asked, are there behavioral differences in how these three lines respond to cane toads?

Kellycagedquoll

Northern quoll captured in Northern Territory, Australia. Credit: Ella Kelly.

The researchers set up two experiments.  First they asked, which would a quoll (that had never before experienced a cane toad) prefer to investigate if given the choice: a dead cane toad or a dead mouse? It turned out that the quoll offspring with two toad-exposed parents were somewhat more interested in mice than in cane toads.  The same was true for the hybrids.  However, the toads with two toad-naïve parents showed little preference.

Second, and more important, the researchers gave quolls from the three lines the opportunity to eat a toad leg (which does not have enough poison to harm the quoll). The results of this experiment were striking; offspring of toad-naïve parents were twice as likely to eat the toad leg than were offspring of toad-exposed parents, or hybrids with one parent of each type.

KellyFig4

Proportion of toad-naive (both parents toad-naive), hybrid and toad-exposed (both parents toad-exposed) quoll offspring that ate a cane toad leg. Error bar = +/- 1 SE.

Kelly and Phillips conclude that toad-smart behavior is a genetically-based trait that has been under strong natural selection in populations of quolls that survived the cane toad invasion.  Hybrid offspring behave similarly to the offspring of two toad-exposed parents, suggesting that toad-smart behavior has a dominance inheritance pattern. The researchers propose using targeted gene flow, in this case introducing toad-adapted individuals into populations prior to the arrival of cane toads. Recently, Kelly and Phillips released 54 offspring with toad-smart genetic backgrounds onto Indian Island, which is about 40 km from Darwin.  The island has a large cane toad population, so the researchers will follow the introduced quoll population to see whether it is genetically equipped to survive in the presence of the cane toad scourge.

note: the paper that describes this research is from the journal Conservation Biology. The reference is Kelly, E. and Phillips, B. L. (2019), Targeted gene flow and rapid adaptation in an endangered marsupial. Conservation Biology, 33: 112-121. doi:10.1111/cobi.13149. Thanks to the Society for Conservation Biology for allowing me to use figures from the paper. Copyright © 2019 by the Society for Conservation Biology. All rights reserved.

Coral can recover (occasionally)

Coral reefs have amazing species diversity, which depends, in part, on a mutualism between the coral animal and a group of symbiotic algae that live inside the coral. The algae provide the coral host with approximately 90% of the energy it needs (from photosynthetic product).  In return, the algae are rewarded with a place to live and a generous allotment of nitrogen (mostly fecal matter) from the coral.  Unfortunately, coral are under attack from a variety of sources. Most problematic, humans are releasing massive amounts of carbon dioxide into the atmosphere, which is increasing ocean temperatures and also making the ocean more acidic.  Both processes can kill coral by causing coral to eject their symbiotic algae, making it impossible for the coral to get enough nutrients.

Moorea Coral Reef LTER site

The coral reef at Mo’orea. Credit: Moorea Coral Reef LTER site.

But other factors threaten coral ecosystems as well. For example, the reefs of Mo’orea , French Polynesia (pictured above), were attacked by the voracious seastar, Acanthaster planci, between 2006-2010, which reduced the coral cover (the % of the ocean floor that is covered with coral when viewed from above) from 45.8% in 2006 to 6.4% in 2009.  Then, in Feb 2010, Cyclone Oli hit, and by April, mean coral cover had plummeted down to 0.4%.

Moorea swimmers

Researchers survey the reef at Mo’orea. Credit: Peter Edmunds.

Peter Edmunds has been studying the coral reef ecosystem at Mo’orea for 14 years, and has observed firsthand the sequence of reef death, and the subsequent recovery.  Working with Hannah Nelson and Lorenzo Bramanti, he wanted to document the recovery process, and to identify the underlying mechanisms.  Fortunately Mo’orea is a Long Term Ecological Research (LTER) site, one of 28 such sites funded by the United States National Science Foundation.  Consequently the researchers had long term data available to them, so they could document how coral abundance had changed since 2005.  Their analysis showed the decline in coral cover from 2007 to 2010, but a remarkable rapid recovery beginning in 2012 and continuing through 2017.

EdmundsFig1

% cover (+ SE) of all coral , Pocillopora coral (the species group that the research team focused on). and macroalgae at Mo’orea over a 13 year period based on LTER data. The horizontal bar with COTs above it represents the time period of maximum seastar predation.

What factors caused this sharp recovery? One general process that could be part of the answer is density dependence, whereby populations have high growth rates when densities are low and there is very little competition, and low growth rates when densities are high and there is a great deal of competition between individuals, or in this case, between colonies. The problem is that though density dependence makes intuitive sense, it is difficult to demonstrate, as other factors could underlie the coral recovery.  Perhaps after 2011 there was more food available, or fewer predators, or maybe the weather was better for coral growth.

EdmundsQuadrats

High density (top) and low density (bottom) quadrats of Pocillopora coral established by the research group.

To more convincingly test for density dependence, Edmunds and his colleagues set up an experiment, establishing 18 1m2 quadrats in April, 2016. The researchers reduced coral cover in nine quadrats to 19.1% by removing seven or eight colonies from each experimental quadrat (low density quadrats), and left the other nine quadrats as unmanipulated controls, with coral cover averaging 32.5% (high density quadrats).  They then asked if, over the course of the next year, more recruits (new colonies < 4cm diameter) became established in the low density quadrats.

Returning in 2017, the researchers discovered substantially greater recruitment in the low density quadrats than in the high density quadrats. This experiment provides strong evidence that the rapid recovery after devastation by seastars and Cyclone Oli was helped by a density dependent response of the coral population – high recruitment at low population density.

EdmundsFig3

Density of recruits just after (left), and one year after (right) the quadrats were established. Solid bars are means (+ SE) for high density quadrats, while clear bars are means (+ SE) for low density quadrats.

In recent years, many coral reef systems around the world have experienced declining coral cover, a loss of fish and invertebrate diversity and abundance, and an increase in abundance of macroalgae.  While many of these reefs continue to decline, others, such as the reefs at the Mo’orea LTER site, are more resilient, and are able to recover from disturbance.  The researchers argue that we need to fully understand the mechanisms underlying recovery – in other words what is causing the density dependent response? Is it simply competition between coral that cause high recruitment under low density, or may interactions between coral and algae be important?  And what types of interactions influence recruitment rates under different densities?  One possibility is that at high densities, coral are eating most of the tiny coral larvae as they descend from the surface after a mass spawning event.  This raises the important question of why many reefs around the world do not show this density dependent response.  Clearly there is much work remaining to be done if we want to preserve this critically endangered marine biome.

note: the paper that describes this research is from the journal Ecology. The reference is Edmunds, P. J., Nelson, H. R. and Bramanti, L. (2018), Density‐dependence mediates coral assemblage structure. Ecology, 99: 2605-2613. doi:10.1002/ecy.2511. Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2018 by the Ecological Society of America. All rights reserved.

Rice fields foster biodiversity

Restoration ecologists want to restore ecosystems that have been damaged or destroyed by human activity.  One approach they use is “rewilding” – which can mean different things to different people.  To some, rewilding involves returning large predators to an ecosystem, thereby reestablishing important ecological linkages.  To others, rewilding requires corridors that link different wild areas, so animals can migrate from one area to another.  One common thread in most concepts of rewilding is that once established, restored ecosystems should be self-sustaining, so that if ecosystems are left to their own devices, ecological linkages and biological diversity can return to pre-human-intervention levels, and remain at those levels in the future.

ardea intermedia (intermediate egret). photo by n. katayama

The intermediate egrit, Ardea intermedia, plucks a fish from a flooded rice field. Credit: N. Katayama.

Chieko Koshida and Naoki Katayama argue that rewilding may not always increase biological diversity.  In some cases, allowing ecosystems to return to their pre-human-intervention state can actually cause biological diversity to decline. Koshida and Katayama were surveying bird diversity in abandoned rice fields, and noticed that bird species distributions were different in long-abandoned rice fields in comparison to still-functioning rice fields.  To follow up on their observations, they surveyed the literature, and found 172 studies that addressed how rice field abandonment in Japan affected species richness (number of species) or abundance.  For the meta-analysis we will be discussing today, an eligible study needed to compare richness and/or abundance for at least two of three management states: (1) cultivated (tilled, flood irrigated, rice planted, and harvested every year), (2) fallow (tilled or mowed once every 1-3 years), and (3) long-abandoned (unmanaged for at least three years).

koshidafig1

Three different rice field management states – cultivated, fallow and long-abandoned – showing differences in vegetation and water conditions. Credit: C. Koshida.

Meta-analyses are always challenging, because the data are collected by many researchers, and for a variety of purposes.  For example, some researchers may only be interested in whether invasive species were present, or they may not be interested in how many individuals of a particular species were present. Ultimately 35 studies met Koshida and Katayama’s criteria for their meta-analysis (29 in Japanese and six in English).

Overall, abandoning or fallowing rice fields decreased species richness or abundance to 72% of the value of cultivated rice fields. As you might suspect, these effects were not uniform for different variables or comparisons. Not surprisingly, fish and amphibians declined sharply in abandoned rice fields – much more than other groups of organisms. Abundance declined more sharply in abandoned fields than did species richness.  Several other trends also emerged.  For example, complex landscapes such as yatsuda (forested valleys) and tanada (hilly terraces) were more affected than were simple landscapes.  In addition, wetter abandoned fields were able to maintain biological diversity, while dryer abandoned fields declined in richness and abundance.

koshidafig2

The effects of rice field abandonment or fallowing for eight different variables.  Effect size is the ln (Mt/Mc), where Mt = mean species richness or abundance for the treatment, and Mc = mean species richness for the control.  The treated field in all comparisons was the one that was abandoned for the longer time.  A positive effect size means that species richness or abundance  increased in the treated (longer abandoned) field, while a negative effect size means that species richness or abundance declined in the treated field. Numbers in parentheses are number of data sets used for comparisons.

When numerous variables are considered, researchers need to figure out which are most important.  Koshida and Katayama used a statistical approach known as “random forest” to model the impact of different variables on the reduction in biological diversity following abandonment.  This approach generates a variable – the percentage increase in mean square error (%increaseMSE) – which indicates the importance of each variable for the model (we won’t go into how this is done!).  As the graph below shows, soil moisture was the most important variable, which tells us (along with the previous figure above) that abandoned fields that maintained high moisture levels also kept their biological diversity, while those that dried out lost out considerably.  Management state was the second most important variable, as long-abandoned fields lost considerably more biological diversity than did fallow fields.

koshidafig4

Importance estimates of each variable (as measured by %increase MSE).  Higher values indicate greater importance.

Unfortunately, only three studies had data on changes in biological diversity over the long-term.  All three of these studies surveyed plant species richness over a 6 – 15 year period, so Koshida and Katayama combined them to explore whether plant species richness recovers following long-term rice field abandonment. Based on these studies, species richness continues to decline over the entire time period.

koshidafig6

Plant species richness in relation to time since rice fields were abandoned (based on three studies).

Koshida and Katayama conclude that left to their own devices, some ecosystems, like rice fields, will actually decrease, rather than increase, in biological diversity.  Rice fields are, however, special cases, because they provide alternatives to natural wetlands for many organisms dependent on aquatic/wetland environments (such as the frog below). In this sense, rice fields should be viewed as ecological refuges for these groups of organisms.

rana-porosa-porosa-tokyo-daruma-pond-frog.-photo-by-y.g.-baba.jpg

Rana porosa porosa (Tokyo Daruma Pond Frog). Credit: Y. G. Baba

These findings also have important management implications.  For example, conservation ecologists can promote biological diversity in abandoned rice fields by mowing and flooding. In addition, managers should pay particular attention to abandoned rice fields with complex structure, as they are particularly good reservoirs of biological diversity, and are likely to lose species if allowed to dry out. Failure to attend to these issues could lead to local extinctions of specialist wetland species and of terrestrial species that live in grasslands surrounding rice fields. Lastly, restoration ecologists working on other types of ecosystems need to carefully consider the effects on biological diversity of allowing those ecosystems to return to their natural state without any human intervention.

note: the paper that describes this research is from the journal Conservation Biology. The reference is Koshida, C. and Katayama, N. (2018), Meta‐analysis of the effects of rice‐field abandonment on biodiversity in Japan. Conservation Biology, 32: 1392-1402. doi:10.1111/cobi.13156. Thanks to the Society for Conservation Biology for allowing me to use figures from the paper. Copyright © 2018 by the Society for Conservation Biology. All rights reserved.

Climate changes a bird’s life in shrinking grasslands

Back in graduate school, a couple of my grad student buddies and I would get together to fish for brown trout in the Kinnickinnic River in western Wisconsin.  We were students at the University of Minnesota (Twin Cities), but the Kinni was the closest trout stream.  Tired of catching small brown trout, we consulted a trout fishing map and discovered that the headwaters of the Kinni were rich in brook trout. So early one morning, map in hand, we followed strange paths and found our sacred brook trout haven. Alas, the only thing it was rich in was corn, now about two feet high – though there was a modest depression where trout waters once had flowed. Our personal depression was perhaps more than modest – having been robbed of brook trout, and the opportunity to experience some pristine waters flowing through a beautiful grassland.

Grasslands, one of the biomes native to parts of Wisconsin and Minnesota, are globally one of the most endangered biomes, because they usually are relatively easy to convert into farmland and suburban developments. Native grasslands harbor a wide biological diversity; consequently conservation biologists are concerned about their continued loss.

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Cool-season grassland in southwest Wisconsin. Credit: John Dadisman.

Ben Zuckerberg, Christine Ribic and Lisa McCauley wanted to know how environmental factors influenced the nesting success of grassland birds, in particular, because as obligate ground nesters, they might be susceptible to changing  weather conditions that will be affecting the climate in coming decades.  A nest built on the ground is much less insulated from the environment than one built in or on a tree or even a ledge.

Bobolink 7 days (Carolyn Byers)

Seven day old bobolink chicks in a ground nest. Credit: Carolyn Byers.

Zuckerberg and his colleagues used Google Scholar and the ISI Web of Science to comb the literature (1982-2015) for studies that explored the nest success of obligate grassland birds in the United States. They identified 12 bird species from 81 individual studies of 21,000 nests. Based on their experience and the literature, both precipitation and temperature were likely to influence nest success, which is the proportion of nests that fledge at least one young. They considered three precipitation time periods: (1) Bioyear – previous July through April of the breeding season, (2) May of the breeding season, (3) June – August of the breeding season. They considered breeding season temperatures during May, and during the period from June-August. The researchers were also interested in the size of the grassland (grassland patch size), reasoning that a larger grassland might provide more diverse microclimates, so, for example, a bird might be able to find a dry microhabitat for nesting in a large grassland, even in a wet breeding season.

ZuckFig1

Map of the identity and location of species considered for this study.

The researchers discovered that both temperature and precipitation were important.  Nest success increased steadily with bioyear precipitation (Figure (a) below).  Presumably, more rain led to more plant growth and more insect survival, which would help feed the young.  Taller plants could also help shade or hide the nests. In contrast, nest success declined sharply with precipitation during spring and summer of the breeding season (Figure (b) and (c)). Heavy rains during the breeding season can flood nests, and also decrease the foraging efficiency of parents who might need to spend more time incubating nests during rainstorms. Lastly, extreme (low or high) May temperatures depressed nest success, which was highest at intermediate temperatures (Figure (d)). Egg viability depends on maintaining a constant temperature, and the parents may be more challenged to thermoregulate at extreme temperatures.  Temperatures later in the breeding season did not affect nest success.

ZuckFig2

Effects of (a) bioyear precipitation (previous July – April of the breeding season), (b) May precipitation during the breeding season, (c) June – August precipitation during the breeding season, and (d) May temperature on nest success. Shaded area represents 95% confidence interval.

But all is not straightforward in the grassland nest success world. These main findings about precipitation and temperature interacted with grassland size in interesting ways.  For example high bioyear precipitation, which overall increased nest success, only did so for smaller grassland patches (dashed line in top graph below), but not for larger patches (solid line).  Extreme May temperatures had different effects on nest success in relation to grassland patch size.  Low May temperatures were associated with high nest success in small patches (dashed line in bottom graph) and with low nest success in large patches (solid line).  High May temperatures were associated with high nest success in large patches, and with low nest success in small patches.

ZuckFig3

Predicted nest success of grassland birds in relation to bioyear precipitation (top graph) and May temperature (bottom graph) in relation to grassland patch size.  Solid lines represent large grasslands, while dashed lines represent small grasslands.  Shaded area is 95% confidence interval.

The researchers were surprised to discover that patch size affected how weather influenced grassland bird nesting success. Some of the patterns seem intuitively logical; for example, in unusually hot breeding seasons birds had higher nest success in larger grasslands than in smaller grasslands.  Presumably, birds were more likely to find a cooler microclimate for their nests in a large grassland.  However it is puzzling why in unusually cold breeding seasons birds had higher nest success in smaller grasslands. The researchers are planning a follow-up study to better document and measure the existence of microclimates in grasslands of different sizes, and explore how different microclimates influence the nesting success of vulnerable grassland birds.  Finding that warmer temperatures and drought generally reduce nest success to the greatest extent in small grassland patches is strong incentive for conservation mangers to establish large core grasslands as a tool to maintain bird populations in the wake of present and future changes to the climate.

note: the paper that describes this research is from the journal Conservation Biology. The reference is Zuckerberg, B. , Ribic, C. A. and McCauley, L. A. (2018), Effects of temperature and precipitation on grassland bird nesting success as mediated by patch size. Conservation Biology, 32: 872-882. doi:10.1111/cobi.13089. Thanks to the Society for Conservation Biology for allowing me to use figures from the paper. Copyright © 2018 by the Society for Conservation Biology. All rights reserved.