Carbon dioxide’s complex personality

Carbon dioxide (CO2) deservedly gets a lot of bad press because it is responsible for much of the global warming Earth is currently experiencing.  Less publicized, but perhaps equally important, CO2 is acidifying oceans, thereby threatening the continued existence of some critical biomes such as coral reefs and kelp forests (acid interferes with the ability of many marine organisms to build their shells).  But carbon dioxide also has a kinder, gentler side, as it is an essential resource for plants, and in some cases higher CO2 levels can increase a plant’s ability to carry on photosynthesis.  Sean Connell and his colleagues explored this complex personality by studying a marine ecosystem that experiences naturally varying levels of CO2. High CO2 levels and acidity exist near CO2-emitting vents at the study site – a volcanic island (Te Puia o Whakaari) off the coast of New Zealand.

White_Island_James Shook [CC BY 2.5 (https-::creativecommons.org:licenses:by:2.5)], from Wikimedia Commons

The volcanic Te Puia o Whakaari off the coast of New Zealand’s north island. Credit: James Shook [CC BY 2.5 (https-//creativecommons.org/licenses/by/2.5)], from Wikimedia Commons.

The major players in this ecosystem are the kelp, Ecklonia radiata, several species of turf-forming algae, and two grazers, the snail, Eatoniella mortoni, and the urchin, Evechinus chloroticus.  The typical vegetation in the region is a mosaic of kelp forest, some scattered small patches of algal turf, and sea urchin barrens – hard rock without significant vegetation, a result of overgrazing by sea urchins.  In contrast, extensive algal mats carpeted the rocks near these vents, and the researchers hypothesized that high CO2 levels caused this shift in dominant vegetation.

IMG_5461

Sean Connell collects data in a habitat dominated by algal turf (and numerous fish). Credit: anonymous backpacker.

Connell and his colleagues chose two vents and two nearby control sites at a depth of 6-8 meters. The CO2 levels and acidification near the vents were approximately equal to the amount projected for the end of the 21stcentury, but there were no differences between vents and controls in temperature, salinity or nutrient concentrations. The researchers estimated photosynthetic rates for kelp and turf algae by measuring the rate of oxygen production. They also estimated snail consumption rates by caging them for 3 days and measuring how much algal turf they removed.  They used an analogous approach to measure sea urchin consumption rates.

Conditions at vents had a major impact on both producers and consumers.  Kelp production decreased slightly, while turf production increased sharply at vents (Figures A and B below).  Urchin density declined (almost to nonexistence) while gastropod density increased markedly at vents (Figures C and D).  Lastly, consumption rates (on a per individual basis) by urchins plummeted, while consumption rates by snails increased sharply at vents (Figures E and F).

ConnellFig3

Comparison of production and consumption at control sites vs. carbon dioxide emitting vents.

These patterns converted the normal mosaic of kelp forest, small algal turf patches and urchin barren into turf-dominated habitats.  Algal turf increased in size and frequency near the vents, while kelp forest shrank into near oblivion.

ConnellFig2

Frequency of patches of turf (light gray bars), urchin barren (medium gray) and kelp (black) in relation to patch size (diameter in meters) at control sites (top graph) and sites near vents (bottom graph).

These results can be pictured visually by the graph below.  Under conditions of present-day pH and CO2 levels, gross algal production is relatively low and urchin consumption is relatively high, which results in negligible net algal turf production (net production = gross production – urchin and gastropod consumption).  High CO2 levels sharply increase gross algal turf production while dramatically decreasing consumption by urchins.  Even though gastropod consumption increases slightly at vents, the overall effect on vents is a dramatic increase of net algal turf production. Consequently, the ecosystem experiences regime shift from kelp to algal turf domination.

ConnellFig1

Summary of effects of CO2 release by vents (bottom) vs Controls (top). Net algal production (red circle) = Gross algal production – urchin and gastropod consumption.  Net algal production in dark green zone is predicted to be turf-dominated (as is found near vents), light green is a mosaic, while white zone represents urchin barrens (low production and high consumption). Error bars are 1 standard error. 

Under current conditions, kelp is the dominant producer over turf algae in the near offshore ecosystem. High consumption by urchins keep the turf algae in check.  But near CO2 emitting vents, high levels of carbon dioxide have a dual effect on this ecosystem, disproportionately increasing turf algae production rate and decreasing urchin abundance and consumption rate.  This allows the competitively subordinate turf algae to replace the competitively dominant kelp, resulting in a dramatically changed ecosystem.  This occurs in the absence of an increase in ocean temperature.  Given that ocean temperature will increase sharply by 2100 (along with CO2 levels), many species interactions are expected to change in the next century, and ecosystem structure and functioning will be very different from what we observe today.

note: the paper that describes this research is from the journal Ecology. The reference is Connell, S. D., Doubleday, Z. A., Foster, N. R., Hamlyn, S. B., Harley, C. D., Helmuth, B. , Kelaher, B. P., Nagelkerken, I. , Rodgers, K. L., Sarà, G. and Russell, B. D. (2018), The duality of ocean acidification as a resource and a stressor. Ecology, 99: 1005-1010. doi:10.1002/ecy.2209 Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2018 by the Ecological Society of America. All rights reserved.

Eavesdropping on antshrikes

Growing up in the Spy vs. Spy era, and a bit later in the Watergate age, I developed a keen appreciation for clandestine operations, which I assumed at that time were unique to human culture.  As it turns out, eavesdropping is practiced by many different species for a variety of reasons. One important example occurs in bird flocks composed of several species of birds. Antshrikes (Thamnomanes ardesiacus) are sentinel species in multi-species flocks because they produce alarm calls when they spot a predacious raptor flying overhead, alerting other nearby birds of the threat. Ari Martinez and his colleagues wondered whether hanging out with antshrikes allowed these other bird species to expand their niches to forage in areas that might otherwise be too dangerous.

Alarm calling species Thamnomanes ardesiacus Photo cred E. Parra 600dpi (1)

An antshrike perched in the Amazonian rainforest. Credit: E. Parra.

This fear-based niche shift hypothesis makes two related predictions.  First, in the absence of antshrikes, the remainder of the flock should shift its range to areas with lower predation risk.  Second, without antshrikes some birds might leave the flock entirely, because without sentinel services they no longer benefit from hanging with other birds. To test these predictions, Martinez and his colleagues identified eight flocks of 5-8 species (including antshrikes) in a tropical lowland forest in southeastern Peru.  They established four removal flocks from which they removed all antshrikes after capturing them in mist nets. They left four control flocks, in which they captured all antshrikes, but then returned them to the flock (to control for the effects of handling).

Group banding and mist netting birds photo ced Micah Reigner

Research team mist-netting and measuring antshrikes.  Credit Micah Reigner

To determine where the flock was spending its time, researchers used a GPS device every 10 minutes to record the center of the flock. They also censused each flock for species composition from dawn to dusk for three days before removal and three days after removal. In control flocks, home range overlapped extensively (average of 69%) when comparing the first (pre-removal) and second (post-removal) three-day period. In removal flocks, there was only 8% overlap in home range, indicating that the remaining flock was shifting its range when antshrikes were gone.

MartinezFig1

Home ranges of a control flock (top) and a flock which had antshrikes removed (bottom). Red color indicates home range during the three day pre-removal period, while blue color indicates home range during the three day post-removal period.  Deeper colors indicate greater occupancy. 

But are the remaining species shifting their niches to safer locations when antshrikes are no longer available as sentinels? To answer this question the researchers measured the presence or absence of vegetation cover at different height intervals every 10 minutes at the center of the flock. Comparing the second (post-removal) to the first (pre-removal) period, the removal flocks (those without antshrikes) moved into understory vegetation (0-8 meters high) that was substantially denser than was the vegetation inhabited by the control flocks (those with antshrikes). Presumably, dense understory protects birds without sentinels from being spotted or captured by raptors flying overhead. These dense understory areas are usually associated with less tree cover at higher height intervals (above 16 meters), which allows more sunlight to reach the forest floor, resulting in lush vegetation growth.

MartinexFig3

Proportion change in vegetation cover occupied by flocks from pre-trial to post-trial period at different height intervals.  Positive numbers indicate an increase in vegetation density. Error bars are 95% confidence intervals. Data are based on the behavior of four control and four removal flocks.

Flocking occurrence is the proportion of time individuals of a particular species spend in flocks.  The fear-based niche shift hypothesis predicts that flocking occurrence should decrease when sentinel species are removed because the benefits of flocking are reduced for the remaining species. When the researchers compared post-removal to pre-removal time-periods, five species showed strong reductions in flocking occurrence for removal flocks in comparison to control flocks, two were unchanged, and one species showed an increase in flocking occurence.

MartinezFig2

Change in proportion flocking occurrence for eight different flocking species in control and removal flocks.  Error bars are 95% confidence intervals.  Chlorothraupis carmioli (CHCA), Epinecrophylla erythrura (EPER), Epinecrophylla leucophthalma (EPLE), Glyphorynchus sprirus (GLSP), Hylophilus ochraceiceps (HYOC), Myrmotherula longipennis (MYLO), Myrmotherula menetriesii (MYME), Xiphorhynchus elegans (XIEL).

The authors emphasize that though flocking occurrence decreased for most species, the flocks did remain intact, which indicates that there are probably other benefits from flocking besides the opportunity to eavesdrop. There might be safety in numbers – a decrease in individual mortality as group size increases, or the possibility that the remaining flock members do provide some information about imminent predator attacks.

Martinez and his colleagues conclude that sentinels help other bird species succeed in tropical rainforests, thriving in dangerous habitats where they might otherwise fear to tread.  These species may provide important ecosystem services, such as dispersing seeds and eating herbivorous insects that threaten plants that are the foundation of these tropical ecosystems.

note: the paper that describes this research is from the journal Ecology. The reference is Martínez, A. E., Parra, E. , Muellerklein, O. and Vredenburg, V. T. (2018), Fear‐based niche shifts in neotropical birds. Ecology, 99: 1338-1346. doi:10.1002/ecy.2217. Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2018 by the Ecological Society of America. All rights reserved.

 

A tale of too many ticks

Many people I know have had the unfortunate experience of a warm season bout with the following symptoms: fatigue, achy joints, headaches, dizziness, fever and night sweats. Some of these symptoms are part of the daily experience of someone who has reached my level of maturity (okay – age), but in combination they suggest infection by the bacterium Borrelia burgdorferi that is transmitted by Ixodes ticks, and causes Lyme disease.  So three years ago, when I experienced those symptoms, I went off to my doctor (after some prodding by my wife) who immediately prescribed a regime of antibiotics that is effective against Lyme. My region of the United States (southern Appalachians) is a center of Lyme infection, so the diagnosis was pretty easy, and thankfully, the antibiotics were effective.

Lyme 2016

Each dot represents one verified case of Lyme disease in the United States in 2016.  I live in the dark blotch in western Virginia.

Richard Ostfeld began investigating the ecology of Lyme disease as a result of a chance event.  About 26 years ago Ostfeld started a new project that explored how white-footed mice may control populations of the invasive forest pest, the gypsy moth.  Mice eat the moth pupae for a couple of weeks in mid-summer.  When he started trapping at the Cary Institute of Ecosystem Studies in New York, he was amazed to see tremendous burdens of larval blacklegged ticks attached to the white-footed mouse (Peromyscus leucopus).  At the field site there was a boom one year and a crash the following year in acorn abundance, which was followed, with a one year time lag, by a boom and a crash in mouse abundance.  Ostfeld wondered what role fluctuating mouse abundance might play in human risk of exposure to tick-borne disease, and how factors affecting mouse abundance might influence the system.

Mouse with 52 larval ticks closeup

This unfortunate mouse harbors 52 larval ticks. Credit: Ostfeld lab at Cary Institute.

Ixodes ticks have a two-year lifecycle, with eggs laid in the spring, six-legged larvae hatching out in summer, getting one blood meal from a rodent or bird host, and emerging as eight-legged nymphs the following spring.  Nymphs find themselves a second host in spring or summer, from which they suck more blood and ultimately metamorphose into adults during the fall season. Adults seek large mammalian hosts, such as white-tailed deer; females feed on the deer, mate with males (who generally don’t feed), lay eggs and die, usually the following spring.

img_7791.jpg

Human finger with (left to right) adult female, adult male, nymph and larval ticks. Credit: Ostfeld lab at Cary Institute.

What makes these ticks tick? Ostfeld, Taal Levi and their colleagues knew from previous work that biotic factors such as mice, acorns and deer were likely to be important, but that predators on mice might also play a role.  It also seemed likely that abiotic factors such as temperature, moisture and snow cover could also be important.  For 19 years, the researchers systematically collected data related to these factors from six large (2.25 ha) field plots at the Cary Institute. They used standard capture-mark-recapture methods to estimate rodent abundance, and data from the Cary Institute’s bow-hunting program to estimate deer abundance. They monitored the presence of carnivores with LED camera traps that were baited with cans of cat food.

coyote-camera-trap.jpg

Coyote captured on LED camera. Credit: Ostfeld lab at Cary Institute.

Lastly, the researchers needed to estimate tick abundance and the percentage of ticks that were infected with the Lyme disease bacterium, Borrelia burgdorferi.  To estimate tick abundance, the researchers systematically dragged 1-m2 white corduroy drag cloths across each plot every three weeks throughout the times of peak tick abundance. Ticks that are searching for a host (known as questing ticks) will grab onto the drag cloth, so in essence, drag cloth censuses provides an estimate of ticks that have not had a blood meal.  Tick infection rates were estimated by subjecting an average of 378 ticks per year to molecular analyses (initially direct immunofluorescence assay, and later quantitative PCR).

tick

Researchers sample for questing ticks by dragging a cloth across the forest floor. Credit: Ostfeld lab at Cary Institute.

Across the 19 years of the study, the density of infected nymphs was strongly correlated to mouse density the previous year, and weakly correlated with deer density two years previously.  Recall the details of the two-year life cycle; it takes a year to go from tick larva to nymph, and a second year to go from nymph to adult to eggs, so these time lags are not surprising. What is surprising is that the density of infected nymphs is negatively correlated with mouse density in the current year and with winter warmth.

OstfeldFig2

Density of infected ticks (x 100) per 100 m2 in relation to (far left) mouse density (per 2.25 ha) in the previous year, (2nd from left) mouse density in the current year, (2nd from right) winter warmth, and (far right) deer density two years previous.  Different color dots represent the six different field sites.

Ostfeld and his colleagues explain that during years of high mouse abundance, many nymphs were attached to rodent hosts, or had already had a blood meal, and thus were not collected on drag cloths. By using the abundant rodents as their secondary hosts, rather than people, high rodent abundance is actually decreasing the probability that the nymphs will infect a human. Infection of humans by adult ticks is less common than infection of humans by nymphs, because many nymphs don’t survive to adulthood, male adults do not feed, and adults are more likely than nymphs to be spotted and removed, due to their larger size.

Nymphal infection prevalence (NIP) measures the fraction or proportion of the nymphs within the community that are actually carrying the bacterium.  From a human perspective, a high NIP indicates that a tick bite is relatively likely to lead to Lyme disease. There was only a small relationship between rodent density the previous year and NIP, so the researchers decided to see if the composition of the predator community might influence NIP. They reasoned that foxes and bobcats were known to be major mouse predators, so by eating mice, they would be removing infected ticks from the population.  Raccoons and opossums have a double effect; they eat mice – though not as many as do foxes and bobcats.  In addition they are dilution hosts, in that they provide blood for nymphs, but do not serve as a vector to the bacterium.  Thus a community with all four of these predators was expected to reduce NIP. The effect of coyotes were more complex because they eat mice, which should reduce NIP, but they also eat or scare away other predators, such as foxes and opossums, which could increase NIP.

OstfeldFig4

Effect size of predator community structure on nymphal infection prevalence (NIP).  Top row animals are (left to right) fox, raccoon, opossum and bobcat.  Communities with coyotes (bottom five communities) tend to have higher NIP, particularly if they lack other predators.

In general, more diverse predator communities tended to have lower nymphal infection prevalence.  Communities with coyotes that also lacked some of the other predators tended to have the highest NIP values.

Ostfeld and his colleagues were surprised to discover that a warm and dry winter and spring season tended to depress tick abundance, while cold winters had little effect. Presumably, emerging nymphs can dry out under warm, dry conditions. The researchers were also surprised to observe the strong decrease in tick abundance associated with high mouse abundance in the current year. It is not uncommon for a boom in mouse abundance one year to be followed by a mouse population crash the next year.  When that occurs, there will be a large number of questing nymphs lurking in the vegetation for hosts, and thus the potential for a major outbreak of Lyme disease.

note: the paper that describes this research is from the journal Ecology. The reference is Ostfeld, R. S., Levi, T. , Keesing, F. , Oggenfuss, K. and Canham, C. D. (2018), Tick‐borne disease risk in a forest food web. Ecology, 99: 1562-1573. doi:10.1002/ecy.2386. Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2018 by the Ecological Society of America. All rights reserved.

Kelp consumption curtailed by señorita

Miranda Haggerty was diving through a kelp forest, and noticed that many kelp bore a large number of tiny limpets that were housed in small scars that they (or a fellow-limpet) had excavated on the kelp’s surface. This got her thinking about how these scars might affect the kelp, and equally relevant, whether there were any limpet predators that might lend the kelp a hand (or a mouth) by removing limpets.

Jerry Kirkhart

A limpet grazes on a kelp frond. Credit: Jerry Kirkhart

Feather boa kelp (Egregia menziesii) is a foundation species within the subtidal marine system off the California coast, providing food and habitat for many species that live on or among its fronds. The tiny seaweed limpet, Lottia insessa, specializes on feather boa kelp, grazing on its fronds and living within the scars. Many invertebrates and fish live within the kelp forest, but the most abundant fish is the señorita, Oxyjulis californica. Haggerty wondered whether the señorita might benefit the kelp (directly) by removing limpets, or (indirectly) by scaring limpets away – what ecologists call a trait-mediated indirect interaction.

bigsenorita.jpg

The señorita – a fearsome predator of limpets.  Credit: Miranda Haggerty

The first order of business was to determine whether the limpets were actually harming the kelp.  Haggerty and her colleagues approached this in two ways.  First they chose 94 kelp plants from kelp forests off the California coast.  From each individual they chose one grazed and one ungrazed frond (each 3 m long). Grazed fronds averaged 5-10 scars and at least 2 limpets per meter of length.  Every three weeks they visited their kelp to score for broken fronds. In 29 of 30 cases, the grazed frond broke before the ungrazed frond (in the remaining cases the entire plant was missing, or both fronds broke and the researchers could not tell which had broken first).

HaggertyFigS1

Photo of feather boa kelp showing grazing scars, including one housing a limpet (left).  Diagram of feather boa kelp showing multiple fronds (right).

But the researchers were concerned that perhaps limpets chose to graze on weaker fronds, so the breakage was not caused by grazing scars, but by limpet choice.  To account for this concern, Haggerty and her colleagues chose 43 ungrazed kelp plants, placed three  limpets on one frond, and chose a second, equal-sized frond as an unmanipulated control. Once again, they visited their plants every three weeks, and discovered that grazed fronds broke first in all 20 pairs that the sequence of frond breakage could be determined.  Clearly, limpet grazing is bad news for feather boa kelp.

How does the señorita fit into this system? The researchers designed a laboratory experiment to address this question.  They used 10 large tanks (1700 L), and set up five different experimental treatments to compare direct effects of predation, and indirect effects of predator presence, on limpet grazing, and ultimately on kelp survival. To isolate the direct effects of predation from the indirect effects of predator cues on limpets, Haggerty and her colleagues placed four kelp fronds into fish exclosure cages, which were housed in the large tanks, and placed three limpets onto some of these fronds.  To mimic actual predation (CE treatment in Table below), they removed limpets by hand at a constant rate typical of señorita predation. For the NCE treatment (testing indirect effects of predator presence) they introduced señorita into the large tank so the limpets experienced the predator cues, but were not eaten. The different treatments are summarized in the table below. These experiments ran for one week and each treatment was replicated 10 times.

HaggertyTableFinalEach day the researchers monitored the number of limpets and grazing scars.  After one week, Haggerty and her colleagues counted the number of grazing scars, and measured the breaking strength of each frond by clamping the frond’s end to a table and pulling on the opposite end with a spring scale until it broke. They then recorded the amount of force needed to break the frond.

brokenkelp.jpg

Clamped kelp frond whose breaking strength has been tested.  Notice that the frond broke at a grazing scar (right). Credit Miranda Haggerty.

Not surprisingly, the predator control (PC) kelp (limpets present without señorita) had the most scars and lost the greatest amount of tissue.  Kelp receiving the consumptive predator effect treatment (CE) had fewer scars and lost less tissue than PC.  But interestingly, kelp receiving NCE and TPE treatments had significantly fewer scars than the CE kelp, and were statistically indistinguishable from each other.  Thus, in the laboratory, the presence of señorita cues (NCE treatment) was more important than actual predation (CE treatment) in reducing kelp scarring and tissue consumption (top and middle graph below).  As a result, the NCE treated kelp were stronger (had greater breaking strength) than were the CE treated kelp (bottom graph below).

HaggertyFig2

Mean (+ standard error) number of grazing scars (top), mass of tissue consumed (middle) and breaking strength (bottom) of kelp in response to five experimental treatments. CE = consumptive effect, NCE = non-consumptive effect, TPE = total predator effect, PC = predator control, LC = limpet control. Different letters above bars indicate significant differences between the means when comparing treatments.

Haggerty and her colleagues replicated this experiment, with a few experimental design modifications, in a field setting.  As with the laboratory experiment we’ve just discussed, the researchers found a very strong non-consumptive effect. The researchers suspect that these limpets respond to chemical cues emitted by their señorita predators. They could not respond to many types of sensory cues because they lack auditory organs, and the experimental design prevented fish from transmitting any shadows (visual cues) or vibrational cues. In addition previous studies have shown that some limpet species use chemoreception for predator avoidance, foraging and homing. However, the nature of this chemical cue is yet to be discovered for this predator-prey system.

senoritaschool.jpg

Schooling señorita. Credit: Miranda Haggerty

Trophic cascades occur when the effects of one species on another species cascade down through the ecosystem. In this case, señorita predators directly and indirectly reduce limpet density, which increases the survival of kelp – a foundation species for this ecosystem. The researchers point out that this trophic cascade only occurs in the southern feather boa kelp range, because señorita are absent further north.  We don’t know if limpets have other predators in the northern range, but we do know that the kelp are structurally more robust further north, so they (and the ecosystem) may be relatively immune to limpet-induced destruction.

note: the paper that describes this research is from the journal Ecology. The reference is Haggerty, M. B., Anderson, T. W. and Long, J. D. (2018), Fish predators reduce kelp frond loss via a trait‐mediated trophic cascade. Ecology, 99: 1574-1583. doi:10.1002/ecy.2380. Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2018 by the Ecological Society of America. All rights reserved.

Mangroves partner with rats in China

Many of us have seen firsthand the havoc that invasive plants can wreak on ecosystems.  We are accustomed to think of native plants as unable to defend themselves, much like a skinny little kid surrounded by a group of playground bullies. ‘Not so fast’ says Yihui Zhang.  As it turns out, many native plants can defend themselves against invasions, and they do so with the help of unlikely allies.

In southern China, mangrove marshes are being invaded by the salt marsh cordgrass, Spartina alterniflora, which is native to the eastern USA coastline. Cordgrass seeds can float into light gaps among the mangroves, and then germinate and choke out mangrove seedlings.  However, intact mangrove forests can resist cordgrass invasion.  Zhang and his colleagues wanted to know how they resist.

mangrove-Spartina ecotone

Cordgrass (pale green) meets mangrove (bright green) as viewed from space. Credit: Yihui Zhang.

Cordgrass was introduced into China in 1979 to reduce coastal erosion.  It proved up to the task, quickly transforming mudflats into dense cordgrass stands, and choking out much of the native plant community.  Dense mangrove forests grow near river channels that enter the ocean, and are considerably taller than their cordgrass competitors.  The last player in this interaction is a native rat, Rattus losea, which often nests on mangrove canopies above the high tide level. At the research site (Yunxiao), many rat nests were built on mangroves, using cordgrass leaves and stems as the building material.

zhangnest.png

Rat nest constructed from cordgrass shoots rests upon a mangrove tree.  Credit Yihui Zhang.

Zhang and his colleagues suspected that cordgrass invasion into the mangrove forest was prevented by both competition from mangroves and herbivory by rats on cordgrass.

Baby rat in the nest

Baby rats in their nest. Credit Yihui Zhang.

 

To test this hypothesis, they built cages to exclude rats from three different habitats: open mudflats (primarily pure stands of cordgrass), the forest edge, and the mangrove forest understory, (with almost no cordgrass). They set up control plots that also had cages, but that still allowed rats to enter.

zhangregenshoot

Arrow points to resprouting cordgrass. Credit Yihui Zhang.

The researchers planted 6 cordgrass ramets (genetically identical pieces of live plant) in each plot and then monitored rodent grazing, resprouting of original shoots following grazing, and shoot survival over the next 70 days.

They discovered that the cages worked; no rats grazed inside the cages.  But in the control plots, grazing was highest in the forest understory and lowest in the mudflats (Top figure below).  Most important, both habitat type and exposure to grazing influenced cordgrass survival.  In the understory, rodent grazing was very important; only one ramet survived in the control plots, while 46.7% of ramets survived if rats were excluded.  In the other two habitats, grazing did not affect ramet survival, which was very high with or without grazing (Middle figure). Rodent grazing effectively eliminated resprouting of ramets in the understory, but not in the other two habitats (Bottom figure).

Zhangfig2

Impact of rat grazing on cordgrass in the field study in three different habitats.  Top figure is % of stems grazed, middle figure is transplant survival, and bottom figure is resprouting after grazing (there was no grazing in the rodent exclusion plots). Error bars are 1 standard error. Different letters above bars indicate significant differences between treatments.

The researchers suspected that low light levels in the understory were preventing cordgrass from resprouting after rat grazing. This was most easily tested in the greenhouse, where light conditions could be effectively controlled.  High light was 80% the intensity of outdoor sunlight, medium light was 33% (about what strikes the forest edge) and low light was 10% the intensity of outdoor sunlight (similar to mangrove understory light).  Rat grazing was simulated by cutting semi-circles on the stembase, pealing back the leaf sheath, and digging out the leaf tissue. Cordgrass ramets were planted in large pots, exposed to different light and grazing treatments, and monitored for survival, growth and resprouting following grazing.

Greenhouse setup

Cordgrass growing in greenhouse under different light treatments. Credit: Yihui Zhang.

Zhang and his colleagues found that simulated grazing sharply reduced cordgrass survival from 85% to 7% at low light intensity, but had no impact on survival at medium or high light intensities.  Cordgrass did not resprout after simulated grazing at low light intensity, in contrast to approximately 50% resprouting at medium and high light intensity.

ZhangFig4

Survival (top) and resprouting (bottom) of cordgrass following simulated grazing in the greenhouse experiment.

The researchers conclude that grazing by rats and shading by mangroves are two critical factors that make mangroves resistant to cordgrass invasion. Rats tend to build their nests near the mangrove forest edge, so it is not clear how far into the forest the rat effect extends. Rats do prefer to forage in the understory (rather than right along the edge), presumably because the understory helps to protect them from predators.  In essence, mangroves compete directly with cordgrass by shading them out, and also indirectly by attracting cordgrass-eating rats. Conservation biologists need to be aware of both direct and indirect effects when designing management programs for protecting endangered ecosystems such as mangrove forests.

note: the paper that describes this research is from the journal Ecology. The reference is Zhang, Y. , Meng, H. , Wang, Y. and He, Q. (2018), Herbivory enhances the resistance of mangrove forest to cordgrass invasion. Ecology. Accepted Author Manuscript. doi:10.1002/ecy.2233. Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2018 by the Ecological Society of America. All rights reserved.

Plant communities bank against drought

Many plants shed their young embryos (seeds) into the soil where they may accumulate in a dormant (non-growth) state over years before germinating (resuming growth and development). Ecologists describe this collection of seeds as a seed bank.  Marina LaForgia describes how scientists were able to germinate and grow to maturity some 32,000 year old Silene stenophylla seeds that was stashed, probably by an ancient squirrel, in the permafrost! With increased climatic variation predicted by most climate models, she wanted to know how environmental variability might affect germination of particular groups of species within a community.  In addition, she and her colleagues recognized that most ecological studies investigate community responses to disturbances by looking at the aboveground species.  It stands to reason that we should consider the below-surface seed bank as a window to how a community might respond in the future.

LaForgiaSeedlings

Some seedlings coming up from the seed bank. Credit:Marina LaForgia.

Seed banks can be viewed as a bet-hedging strategy that spreads out germination over several (or many) years to reduce the probability of catastrophic population decline in response to one severe disturbance, such as drought, flood or fire. In some California annual grassland communities, species diversity is dominated by annual forbs – nonwoody flowering plants that are not grasses. Many forbs produce seeds that can lie dormant in the seed banks for several years. Though these forbs are the most diverse group, there are also about 15 species of exotic annual grasses that dominate the landscape in abundance and cover. These grasses dominate because they produce up to 60,000 seeds per m2, they grow very quickly, and they build up a layer of thatch that suppresses native forbs. However, seeds from these grasses cannot lie dormant in the seed bank for very long.

 

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Area of field site dominated by Delphinium (purple flower) and Lasthenia (yellow flower).  Looking closely you can also see some tall grasses rising. Credit Marina LaForgia.

How is drought affecting these two major components of the plant community? LaForgia and her colleagues answered this question by collecting seeds from a northern California grassland at the University of California McLaughlin Natural Reserve in fall 2012 (beginning of the drought) and fall 2014 (near the end of the drought). They used a 5-cm diameter 10-cm deep cylindrical sampler  to collect soil and associated seeds from 80 different plots.  The researchers also used these same plots to estimate aboveground-cover, and to identify the aboveground species that were present. The research team germinated and identified more than 11,000 seeds.

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Plants germinating in the greenhouse. Credit Marina LaForgia.

The researchers knew from previous work on aboveground vegetation that exotic annual grasses declined very sharply in response to drought.  In contrast, the native forbs did relatively well, in part depending on their specific leaf area (SLA) – a measure of relative leaf size, with low SLA plants conserving water more efficiently. It seemed reasonable that these same patterns would be reflected belowground. Recall that most grass seeds are incapable of extended dormancy, while many forbs can remain dormant for several years. Consequently, LaForgia and her colleagues expected that grass abundance in the seed bank would decline more sharply than would forb abundance. In addition, they expected that high SLA forbs would not do as well as low SLA forbs during drought.

The researchers discovered very sharp differences between the two groups over the course of the drought. Exotic annual grasses declined sharply in the seed bank, while native annual forb abundance tripled.  Aboveground cover of grasses declined considerably, while aboveground cover of forbs increased modestly.  Clearly the exotic grasses were suffering from the drought, while the forbs were doing quite well.

LaForgiaFig1

(a) Seed bank abundance of grasses (red circles) and forbs (blue triangles) at beginning of drought (2012) and near end of drought (2014). (b) Percent cover of grasses (red circles) and forbs (blue triangles) at beginning of drought (2012) and near end of drought (2014). Data are based on samples from 80 plots. Error bars indicate one standard error.

We can see these differences on an individual species basis, with most of the grasses declining modestly or sharply in abundance, while most of the forbs increased.

LaForgiaFig2

Mean change in seed bank abundance per species based on 15 exotic grass species and 81 native forb species.

It is not surprising that the grasses do so poorly during the drought.  Presumably, less water causes poorer germination, growth, survival and seed production.  In addition, because grass seeds have a low capacity for dormancy, grass abundance will tend to decrease in the seed bank very quickly with such a low infusion of new seeds.

But why are the forbs actually doing better with less water available to them?  One explanation is that grass abundance and cover declined sharply, causing the forbs to experience reduced competition with grasses that might otherwise inhibit their growth, development and reproductive success. The tripling of native forbs in the seed bank was much greater than the 14% increase in aboveground forb cover.  The researchers reason that the drought caused many of the forb seeds to remain dormant, leading to them building up in the seed bank. This was particularly the case for low SLA forbs, which increased much more than did high SLA forbs in the seed bank.

We can understand exotic grass behavior in the context of their place of origin – the Mediterranean basin, which tends to have wet winters.  In that environment, natural selection favored individuals that germinated quickly, grew fast and made lots of babies. Since their introduction to California in the mid 1800s, 2014 was the driest year on record.  It will be fascinating to see if these exotic grasses can recover when, and if, wetter conditions return.  Can we bank on it?

note: the paper that describes this research is from the journal Ecology. The reference is LaForgia, M.L., Spasojevic, M.J., Case, E.J., Latimer, A.M. and Harrison, S.P., 2018. Seed banks of native forbs, but not exotic grasses, increase during extreme drought. Ecology99 (4): 896-903. Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2018 by the Ecological Society of America. All rights reserved.

Successful scavengers

Scavengers have a bad reputation. They reputedly eat foul smelly stuff, and are too lazy or incompetent to track down prey on their own, depending on “noble” beasts such as lions to kill prey, and then sneaking a few bites when the successful hunters are not looking (or after they’ve stuffed themselves). Of course the reality is that scavenging is simply one way that animals make a living. Many different species, including lions, will scavenge if given the opportunity, and from a human perspective, scavengers provide several important ecosystem services. As one example described by Kelsey Turner and her colleagues, ranchers in parts of Asia gave diclofenac, a non-steroidal anti-inflammatory drug, to their cattle, which had the unintended consequence of killing much of the vulture community. Losing vultures from the scavenging community increased the prevalence of rotting carcasses, which caused feral dog and rat populations to skyrocket, resulting in a sharp increase of human rabies cases in India. The take-home message is that we need to understand what factors influence scavenging behavior and scavenging success.

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Golden eagle overwintering in South Carolina scavenges a pig carcass in a clearcut. Credit: Kelsey Turner.

Turner and her colleagues were particularly interested in whether the size of a carcass, the habitat in which an animal dies, and the time of year, influence scavenging dynamics.   The researchers varied carcass size by using three different species: rats (small), rabbits (medium) and pigs (large). Habitats were clearcuts, mature hardwood, immature pine, and mature pine forest. Time of year was divided into two seasons: warm (May – September) and cool (December – March). I should point out that the cool season was mild by many standards, as the research was conducted at the Savannah River Site in South Carolina, with a mean winter temperature of about 10 ° C.

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Map of Savannah River Site showing the study sites and diverse habitats.

The researchers collected data by laying down carcasses of varying size in each of the habitats in both summer and winter. Each carcass was observed by a remote sensing camera that captured the scavenging events, allowing the researchers to identify the species of each scavenger and how long it took for the carcass to be detected and consumed.

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Two coyotes captured by a remote sensing camera scavenging a pig carcass on a rainy day. Credit: Kelsey Turner.

Scavengers discovered 88.5% of the carcasses placed during the cool season, but only 65.4% of carcasses placed during the warm season. Carcass size was also important, with only 53.9% of rats detected, in contrast to 78.5% of rabbits and 97.8% of pigs detected. But habitat interacted with these general findings: for example scavengers consumed all (23) rabbits in clearcuts, but only about 70% of rabbits placed in the other three habitats.

Detection time also varied with carcass size; in general scavengers found pigs more readily than rats or rabbits. As the graphs below show, this relationship was quite complex. Pigs were detected much more quickly than the smaller carcasses in clearcuts, and somewhat more quickly in mature pine. Additionally, this difference between pigs and the other species is stronger in the warm season (left graph) than in the cool season (right graph). In fact, there is no difference in detection time of pigs, rabbits and rats placed in mature pine during the cool season.

EcologyFig1Turner

Natural log of mean detection time (in hours) of rat, rabbit and pig carcasses in warm season (left) and cool season (right) in different habitats.  CC = clearcut, HW = mature hardwood, IP = immature pine, MP = mature pine.

Not surprisingly pigs tended to persist longer (before being totally consumed) than the other two species. More strikingly, persistence time for all three species was much greater in the cool season than in the warm season.

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Natural log of mean carcass persistence time (in hours) of rat, rabbit and pig carcasses during the cool and warm seasons.

Turner and her colleagues identified 19 different scavenger species; turkey vultures, coyotes, black vultures, Virginia opossums, raccoons and wild pigs were the most frequent. The first scavengers to detect pig carcasses were usually turkey vultures (76.0%) or coyotes (17.3%). An average of 2.8 different species scavenged at pig carcasses, in contrast to 1.5 at rabbit carcasses and 1.04 at rat carcasses. As you might imagine, most scavengers made short work of rat carcasses, so there was not much opportunity for other individuals or species to move in. Carcasses that persisted longer generally had a greater diversity of scavengers; for example, carcasses scavenged by 1, 2 or 3 species persisted, on average, for 90.5 hours, while those scavenged by 4, 5 or 6 species persisted, on average for 216.5 hours.

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A flock of turkey vultures in a clearcut surround and scavenge a pig carcass. Credit: Kelsey Turner.

Early ecologists viewed feeding relationships within an ecological community as a linear process in which plants extract nutrients from soils and calories from the air, which they pass onto herbivores and then to carnivores, with considerable energy being lost in each transfer. Now, we use a food web perspective, which considers the essential contributions of scavengers and decomposers (among others) to these feeding relationships. Carcasses decompose much more quickly during the warm season, returning calories and nutrients to lower levels of the food web. Microbial decomposers are, in essence, competing with vertebrates for carcasses, and being metabolically more active in warm months, are able to extract a greater portion of the resources from the carcass than they can during the winter. Slow decomposition in winter allows longer carcass persistence, leading to a greater number and greater diversity of scavengers. As a bonus for those who believe in human primacy, these same scavengers help to create a cleaner and healthier world.

note: the paper that describes this research is from the journal Ecology. The reference is Turner, K. L., Abernethy, E. F., Conner, L. M., Rhodes, O. E. and Beasley, J. C. (2017), Abiotic and biotic factors modulate carrion fate and vertebrate scavenging communities. Ecology, 98: 2413–2424. doi:10.1002/ecy.1930. Thanks to the Ecological Society of America for allowing me to use figures from the paper. Copyright © 2017 by the Ecological Society of America. All rights reserved.